rs31139719 SNP Detail

Summary

• ID
  rs31139719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5709963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CCAGGACCAG GGAACAAATG
  Y
  CTAAGTCCTC CTAGGTTAAA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45000425	mCV24137874	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss146013231	ENSMUSSNP6675637	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss325717228	CHEV_19_5659935	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31139719					SNP	T	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5709963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	800 bp proximal
Rr543103	regulatory region 543103	1690 bp proximal
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157621	transcription start site region 157621	1684 bp upstream
Tssr157622	transcription start site region 157622	1690 bp downstream