rs31140156 SNP Detail

Summary

• ID
  rs31140156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179789374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG AAATAATAGA AATTATGTGT
  R
  TGTGTGTGTG TAAAAAGATG TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss44999363	mCV24589575	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss146372745	ENSMUSSNP5194927	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31140156					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179789374 () rs orientation: forward

Symbol	Name	Function Class
Cdc42bpa	CDC42 binding protein kinase alpha	within coordinates
Cpgi1100	CpG island 1100	1079 bp distal
Rr29078	regulatory region 29078	within coordinates
Tssr10433	transcription start site region 10433	1828 bp downstream
Tssr10434	transcription start site region 10434	1729 bp downstream
Tssr10435	transcription start site region 10435	1030 bp downstream