rs31141336 SNP Detail

Summary

• ID
  rs31141336
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95035213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GCCACAAAGA GTGGTGACCC
  W
  ATCGCCAATG TAAGGCTAGC TGACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45502256	mCV24559522	ABI	CRAMUS_MOUSE	f	SNP	A	A	T		A
ss46771772	NES10666962	PERLEGEN	MM_PANEL2	f	SNP	A			A		T		T	T	A	T		T
ss135510041	ENSMUSSNP3593735	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320841123	CHEV_3_94931824	CHEVERUD	SCREENING_POP	f	SNP							T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31141336					SNP	A	A	T	A	A	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771772	NES10666962	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95035213 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	1280 bp proximal
Scnm1	sodium channel modifier 1	1817 bp downstream
Tmod4	tropomodulin 4	Coding-Synonymous
Tssr30493	transcription start site region 30493	1703 bp downstream
Tssr30494	transcription start site region 30494	1689 bp downstream
Tssr30495	transcription start site region 30495	1675 bp downstream
Tssr30496	transcription start site region 30496	1653 bp downstream
Tssr30497	transcription start site region 30497	442 bp downstream