rs31141406 SNP Detail

Summary

• ID
  rs31141406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41581728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG TGGAGAGAAC GAGACTAAGA
  Y
  AAAGCACAGT GTGATGTATG TACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45502065	mCV24365077	ABI	CRAMUS_MOUSE	f	SNP	C	T			T		C
ss60397256	NES15898155	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		C		T		C	T	C	C		T
ss135042573	ENSMUSSNP3847976	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T					C
ss320728938	CHEV_3_41431215	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31141406					SNP	C	T	T	T	T	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60397256	NES15898155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41581728 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	within coordinates