rs31141538 SNP Detail

Summary

• ID
  rs31141538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19306862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTGAA GGCGGGATGT
  AAAGTTCAAA GTTACCCAGG GCCAGTTCAA GGCCAGCCTG GGGCTACTGT TCTGCCTGAT
  AATCTCAGGG GAAAACAAAA CAAAACAAAA CCCAGACAAC AAGAAGAAAG TTAAAGAGGA
  ATGGGTCAGT TTGGAGACCA TTAGGTCTAC CTTGAGTTAC CAGGATGCGA AACTTGCTGG
  K
  CTTCCAGGCT AGCAGATAGG GCCAATTTCT CCATTCGCAT TGTAAAGTAA CAGTCCGCAG
  TCCTCCCACC TCCTATGCAA ATTCGCTAAA TGGGGCCACA CCTGAGCGTA AGCAGCCCGA
  GGGCAGGATC TGTTCCCTCC GCGGCACCCG TGGGCGGGCG GGTCAGTTTC CTTTTAATTC
  CTCCTGGCCT CCTAGCGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46000559	mCV25052827	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G
ss48163414	NES11821951	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	T		T	G	G	G	T	T	T	T	G
ss148479074	ENSMUSSNP275328	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31141538					SNP	T	T	G	G	G	T	T	G	T	G	G	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163414	NES11821951	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19306862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	46 bp proximal
Gemin7	gem nuclear organelle associated protein 7	within coordinates
Rr380485	regulatory region 380485	within coordinates
Rr643192	regulatory region 643192	1869 bp distal
Rr643193	regulatory region 643193	within coordinates
Rr643194	regulatory region 643194	21 bp proximal
Rr643195	regulatory region 643195	700 bp proximal
Tssr70933	transcription start site region 70933	420 bp downstream
Tssr70934	transcription start site region 70934	435 bp downstream
Tssr70935	transcription start site region 70935	442 bp downstream
Tssr70936	transcription start site region 70936	856 bp downstream