rs31142432 SNP Detail

Summary

• ID
  rs31142432
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10413075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTCTGACC GCAGAACGGA GACCCGTTCC TCTGTCTCGG
  ACCTCGTCAA CTCCCTTACC AGCGAGATGC TCATGGTGAG AAGGGTTGGG GACGGGCTGT
  K
  GGGGGACCAG AAGTAGTCAA CTCAGTCAGA GACTTAGGTA CTCAGTCCCA GCCAGGTGGC
  TTTGCTGACT GACTGAGGCC CGCTCCTCTC CACCCCCAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45001097	mCV22700110	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	G
ss146042366	ENSMUSSNP3073876	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G
ss325720392	CHEV_19_10510201	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31142432					SNP	T	T	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10413075 () rs orientation: forward

Symbol	Name	Function Class
Rr544111	regulatory region 544111	1264 bp distal
Rr544112	regulatory region 544112	142 bp proximal
Rr544113	regulatory region 544113	403 bp proximal
Rr544114	regulatory region 544114	1893 bp proximal
Rr544115	regulatory region 544115	1944 bp proximal
Syt7	synaptotagmin VII	within coordinates
Tssr155051	transcription start site region 155051	505 bp downstream