rs31142827 SNP Detail

Summary

• ID
  rs31142827
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GGACTCCAGG CACAGAAATG
  R
  TATTTTGTCA AGTAATTCCA GCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45502647	mCV22676217	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss46817697	NES10865033	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		A	A	G	A		A	A	A	A		A
ss134653773	ENSMUSSNP5685521	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss320673712	CHEV_3_17688233	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31142827					SNP	G	G	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817697	NES10865033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1102 bp distal
Gm10742	predicted gene 10742	1335 bp upstream
Gm56811	predicted gene, 56811	1095 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1688 bp upstream
Rr573841	regulatory region 573841	1887 bp distal
Rr573842	regulatory region 573842	1106 bp distal
Rr573843	regulatory region 573843	605 bp distal
Rr573844	regulatory region 573844	599 bp proximal
Rr573845	regulatory region 573845	1100 bp proximal
Rr573846	regulatory region 573846	1224 bp proximal
Rr573847	regulatory region 573847	1830 bp proximal
Rr573848	regulatory region 573848	2000 bp proximal
Tssr28480	transcription start site region 28480	1494 bp upstream
Tssr28481	transcription start site region 28481	1659 bp upstream
Tssr28482	transcription start site region 28482	1723 bp upstream
Tssr28483	transcription start site region 28483	1818 bp upstream
Tssr28484	transcription start site region 28484	1887 bp upstream
Tssr32676	transcription start site region 32676	1915 bp upstream
Tssr32677	transcription start site region 32677	1388 bp upstream
Tssr32678	transcription start site region 32678	1374 bp downstream