rs31142852 SNP Detail

Summary

• ID
  rs31142852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90601491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCTCTGC TATTCTTTCA CTTCATGCTA CTTTCTTTAA
  TGTCCTCACA ATGAATATAA AAGTTCTTTT ACCTAAAGGC TGGACTATGG CCTTCATCGT
  M
  TTGATGATCT CTATTGTAAT AAAGCCCATC TTGAAGGGTA GTGGGTTTTA ACTTCCTTCT
  CCAGGAACTA ACTGAACCTG TCATCTCATT GTTTTAAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45502181	mCV24983539	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss135478683	ENSMUSSNP5630568	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss320838594	CHEV_3_90498106	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31142852					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90601491 () rs orientation: forward

Symbol	Name	Function Class
S100a9	S100 calcium binding protein A9 (calgranulin B)	within coordinates
Tssr949	transcription start site region 949	1394 bp downstream
Tssr950	transcription start site region 950	1263 bp upstream
Tssr951	transcription start site region 951	within coordinates
Tssr952	transcription start site region 952	938 bp upstream
Tssr953	transcription start site region 953	984 bp downstream
Tssr954	transcription start site region 954	1809 bp upstream
Tssr30268	transcription start site region 30268	1546 bp downstream
Tssr30269	transcription start site region 30269	1435 bp downstream
Tssr30270	transcription start site region 30270	1287 bp downstream
Tssr30271	transcription start site region 30271	1850 bp upstream
Tssr34252	transcription start site region 34252	1451 bp upstream
Tssr34253	transcription start site region 34253	1319 bp upstream
Tssr34254	transcription start site region 34254	770 bp downstream
Tssr34255	transcription start site region 34255	865 bp downstream
Tssr34256	transcription start site region 34256	940 bp downstream
Tssr34257	transcription start site region 34257	1000 bp downstream
Tssr34258	transcription start site region 34258	1061 bp downstream
Tssr34259	transcription start site region 34259	1188 bp downstream
Tssr34260	transcription start site region 34260	1500 bp downstream
Tssr34261	transcription start site region 34261	1522 bp downstream
Tssr34262	transcription start site region 34262	1572 bp downstream
Tssr34263	transcription start site region 34263	1604 bp downstream