rs31142889 SNP Detail

Summary

• ID
  rs31142889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30914583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTG TATCTTTTTT TTTTCAATCA
  R
  GTACCCAAAT CCACATTTGT CCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45000994	mCV24836478	ABI	CRAMUS_MOUSE	f	SNP	G		G	A
ss148848312	ENSMUSSNP79433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss319676657	CHEV_1_30932347	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31142889					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30914583 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	1230 bp distal
Gm70275	predicted gene, 70275	within coordinates
Phf3	PHD finger protein 3	1594 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	1932 bp distal
Rr408757	regulatory region 408757	1431 bp distal
Rr408758	regulatory region 408758	493 bp distal
Rr408759	regulatory region 408759	370 bp distal
Tssr6135	transcription start site region 6135	1489 bp downstream
Tssr6136	transcription start site region 6136	462 bp downstream
Tssr11167	transcription start site region 11167	1845 bp upstream
Tssr11168	transcription start site region 11168	1577 bp upstream
Tssr11169	transcription start site region 11169	409 bp downstream