rs31142958 SNP Detail

Summary

• ID
  rs31142958
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8728374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA GAACGAAAAC CAAGAAGCCG
  K
  AGATTTCCCA ACCAGCACAG GCTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45503337	mCV24641289	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss134569706	ENSMUSSNP5806719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss320647888	CHEV_3_8663314	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31142958					SNP	G	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8728374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12961	CpG island 12961	1208 bp proximal
Hey1	hairy/enhancer-of-split related with YRPW motif 1	45 bp downstream
Rr573304	regulatory region 573304	426 bp distal
Rr573305	regulatory region 573305	1374 bp proximal