rs31143546 SNP Detail

Summary

• ID
  rs31143546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45291347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAA CCCCAGCCTG TCATTTCCCC
  Y
  ACCCACTGGG CTCTGTTTCC TATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46000781	mCV25292083	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss149139907	ENSMUSSNP2079308	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31143546					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45291347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19076	CpG island 19076	1115 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	within coordinates
Rr400317	regulatory region 400317	1741 bp upstream
Rr646529	regulatory region 646529	1920 bp distal
Rr646530	regulatory region 646530	1414 bp distal
Tssr66601	transcription start site region 66601	1911 bp downstream
Tssr66602	transcription start site region 66602	1484 bp downstream
Tssr66603	transcription start site region 66603	136 bp downstream