rs31143709 SNP Detail

Summary

• ID
  rs31143709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64996956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA AAGTACAGAA TCAAATTGTG
  R
  TTGGTTGAAT AGATTTGGCT CCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45001006	mCV23030155	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss149168858	ENSMUSSNP295110	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss319746080	CHEV_1_65004371	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31143709					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64996956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi329	CpG island 329	910 bp distal
Gm51627	predicted gene, 51627	within coordinates
Plekhm3	pleckstrin homology domain containing, family M, member 3	973 bp upstream
Rr412356	regulatory region 412356	1285 bp distal
Rr412357	regulatory region 412357	984 bp distal
Rr412358	regulatory region 412358	1031 bp distal
Rr412359	regulatory region 412359	483 bp distal
Tssr11945	transcription start site region 11945	1072 bp upstream
Tssr11946	transcription start site region 11946	1015 bp upstream
Tssr11947	transcription start site region 11947	979 bp upstream
Tssr11948	transcription start site region 11948	962 bp upstream