rs31145629 SNP Detail

Summary

• ID
  rs31145629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110077646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTCTA CCCCCCCTTC
  CCTCTCTCCC CCCCTTCCAT TTTATTCCTC TTTGGTAACA GTTTTCAGTT CTTAGCAAGT
  GGCTCATGCC TTAGTCTGTG GACACTTCCT AATCTGTTGC GTTAAACCCC TGGGGAAGAA
  CATAATGTAA AAAGGCGCCT GCATCAGAAG GCGCCTATAT CTCCGTTTTT AAGTGTGGCC
  R
  AATTTCTTTC CACTGGGATA GTGTGTTCTC AGTACTGGAG GGTTATTAGT TATGATTGGA
  GGTTAAAAAT TAGTAAAAAA TTCTAAAATG TGATTAGTTA AGCTAGATCA ATTGCATTGC
  TTCTAGAATT GACTGTTTTC AAATAGCTCC CCAAATGTTA TAGCCAGAGG ATAGAAATGG
  AGCAAGGTGA CAGGGCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47521549	NES11196904	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31145629					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47521549	NES11196904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110077646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21012	CpG island 21012	1987 bp proximal
Rr669673	regulatory region 669673	1187 bp proximal