rs31146581 SNP Detail

Summary

• ID
  rs31146581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:110078773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCACTGC CAGCAGGGAT
  CAGTTTTCAT AATGGCGTGT GGGGCTGGCA TAGCATTTGT CACGGCTCCT GGCCACCGAC
  TCGCGGTGGG TGGGTTTCTG TTAGAGCATC ACATTTTAAA ATCTCATCAA CAGTCAGTTT
  ATCGGCTTGC AGAGAGGATA TAGTATTTTT TAATAAATCG AAATCCACTC AATCCATTCA
  Y
  AGGGAAGTCT TCCAATGTGG CTAGTGATGA AACAGCGTAA TACTGGATTT TTAAAATGGA
  ATGTCAAGGG GCCTTGGTTT TATTTATCTC TTAGGGACTG GTGGGAAGAG CAATTCTCTC
  AGAGAAATTT CAAAAATAAA AAACCAAAAG CCTTGTCTGC AGCTGATGCT GGGTGAGTGA
  GTGTATCCTC TCCCAGGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47521561	NES11196851	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31146581					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47521561	NES11196851	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:110078773 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21012	CpG island 21012	860 bp proximal
Rr669673	regulatory region 669673	60 bp proximal