rs31147350 SNP Detail

Summary

• ID
  rs31147350
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48340801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATCAG GTACCTATTA
  GTAATCAAAT CACATGCCAA TAAGATAGTT CAAATGACCC AATTAGCAAA TGTTACAAAA
  TCAAAATAAA AAACCATAAT CTCAAAAAGG AACTGGGAGG AGGAGACTGA CAGAGATGGG
  AGGGATAGTT GAGAGAACTG AGGAGAGTAA TCAGGGTATA TTGTGGCATA AAGGGAATTA
  W
  CAAAGAAAGC AATTAATCAA TATTGAATGC CCGGGGCAGA GCACAGGGAC CCTGTAATCA
  CAGCAATAGC CAGCTCTGAG TACAGATGAC ATCCACTTTA CTACAATTAA TAAGGCTCCA
  TATTCTGTGA TATTGGGGAG GGTCAGAGAT AGCTTTAACT TTCCCTAAGT ATGTACATTG
  TTGATAAATG ATAATTAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46002491	mCV24993904	ABI	CRAMUS_MOUSE	f	SNP	T	A	T					T		T
ss48220974	NES11805109	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	T	A	T	A	A	T
ss149205781	ENSMUSSNP4595325	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31147350					SNP	T	A	T	T	T	T	T	T	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48220974	NES11805109	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48340801 () rs orientation: forward

Symbol	Name	Function Class
Tssr72617	transcription start site region 72617	706 bp downstream
Tssr72618	transcription start site region 72618	723 bp downstream
Tssr72619	transcription start site region 72619	732 bp downstream
Tssr72620	transcription start site region 72620	771 bp downstream