rs31148850 SNP Detail

Summary

• ID
  rs31148850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:115630904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCG GAAACGACCA CCTTTTATCT
  R
  TCCGAACACA CCAATTCTTT TTATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46001563	mCV22732246	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss145720540	ENSMUSSNP1641958	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31148850					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115630904 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19603	CpG island 19603			within coordinates
Cpgi19604	CpG island 19604			1795 bp proximal
Rr654127	regulatory region 654127			633 bp distal
Rr654128	regulatory region 654128			within coordinates
Rr654129	regulatory region 654129			1429 bp proximal
Sox6	SRY (sex determining region Y)-box 6			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Sox6os	SRY (sex determining region Y)-box 6, opposite strand			310 bp upstream
Tssr68686	transcription start site region 68686			251 bp upstream
Tssr68687	transcription start site region 68687			327 bp upstream
Tssr74377	transcription start site region 74377			669 bp upstream
Tssr74378	transcription start site region 74378			547 bp upstream
Tssr74379	transcription start site region 74379			1937 bp downstream