rs31149299 SNP Detail

Summary

• ID
  rs31149299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89842998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAAGAT TGACTACTAG
  AATGTAGTAA ACACCTAACC ATCTAGCATT GTATGTAAGT TGTCAAAATA ACAGTGTATT
  ATATATGTTA GTATGGGTCA TCTCTTATGA TATCTTACTT AAGATATTTG TGTGTATATG
  ATAGTTTATT TTTTGATGAC TAACGTGTGG GGCCTGTGAT GTGACTCACT AAGAATAAAC
  W
  GCTGCTTATG GTGTTTTGTT TTTTTTTATA TTTCTAACCT TTTGATTAAT TCTTAAACAC
  TGTCAAGGTT TTTAATTTTT TAAATTGTAA ATAAATACAC TTATTTTATC AAAATATTTG
  TTATGCCACA ACCTCTTTTC AATGATGGTC CTGCCCTGGT GGTAGACATG TGGTGTCATG
  TTATTTTGAG GATGCCCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46003100	mCV22592388	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T		T
ss61031560	NES16092946	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	T		T	T	T	T		T	T	T	T		T
ss145293704	ENSMUSSNP2857444	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
ss322314403	CHEV_7_97342300	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31149299					SNP	T	T	A	A	A	T	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031560	NES16092946	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89842998 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67742	transcription start site region 67742	546 bp upstream
Tssr67743	transcription start site region 67743	1662 bp upstream