rs31150475 SNP Detail

Summary

• ID
  rs31150475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11506642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTATTCA GTCAGCATCT
  TAGGATATGT TTTTCTTCCT TCTGATATTA CTTTATTTCT TGCATAAAGA CACTAAGGAA
  ATAATGTTTG TTAATTGCAT GCAACCGTTC TCAGCCAGCT CGAGGGGTTT GCTTCAGTAA
  TTGAACCGAA AAGCTTTGCT CTGACCAGAC CTTTATTTAG AGTGTGGAAA GGAGAGGAGA
  K
  GATATATATA TATCAAATAT ATATATCACA TAAGGTGTGC TAGTCTCACC TTGGAATATC
  TACAACATTG AATGAAATTC TATCATGTAT ATACATGTGC CTATGTATCT ATCTTCCGTC
  CTATATGCAT AAACATATGT ATGCATATAT GTATATATAT ATATATGTAT TCATTCACAA
  TCTGAAACCA CATATTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45001275	mCV23010907	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss146050345	ENSMUSSNP5578086	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31150475					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11506642 () rs orientation: forward

Symbol	Name	Function Class
Ms4a6b	membrane-spanning 4-domains, subfamily A, member 6B	Intron
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Tssr155256	transcription start site region 155256	676 bp downstream
Tssr155257	transcription start site region 155257	1654 bp upstream
Tssr155258	transcription start site region 155258	1994 bp upstream