rs31150475 SNP Detail

Summary

• ID
  rs31150475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:11506642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTATTCA GTCAGCATCT
  TAGGATATGT TTTTCTTCCT TCTGATATTA CTTTATTTCT TGCATAAAGA CACTAAGGAA
  ATAATGTTTG TTAATTGCAT GCAACCGTTC TCAGCCAGCT CGAGGGGTTT GCTTCAGTAA
  TTGAACCGAA AAGCTTTGCT CTGACCAGAC CTTTATTTAG AGTGTGGAAA GGAGAGGAGA
  K
  GATATATATA TATCAAATAT ATATATCACA TAAGGTGTGC TAGTCTCACC TTGGAATATC
  TACAACATTG AATGAAATTC TATCATGTAT ATACATGTGC CTATGTATCT ATCTTCCGTC
  CTATATGCAT AAACATATGT ATGCATATAT GTATATATAT ATATATGTAT TCATTCACAA
  TCTGAAACCA CATATTTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45001275	mCV23010907	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T	T
ss146050345	ENSMUSSNP5578086	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31150475					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11506642 () rs orientation: forward

Symbol	Name	Function Class
Ms4a6b	membrane-spanning 4-domains, subfamily A, member 6B	Intron
Tssr155256	transcription start site region 155256	676 bp downstream
Tssr155257	transcription start site region 155257	1654 bp upstream
Tssr155258	transcription start site region 155258	1994 bp upstream