rs31150626 SNP Detail

Summary

• ID
  rs31150626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:43113986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGAAGGAG GAGGATTGAA GTCTGAACCC CTGGGTTTGA
  GGGAAGAGGG GGTGGGTCTT GACCTCAGAG TCTGAAGGAG GGCTGGAGTC TGGAGTCCTC
  R
  GACTGATGGA ATAAGATTGG GGTTTGGACA CCTAAGTTTG CGGGCTGAGG TATGCACCTC
  TGGGTCCAAG GGAGGAGGGC TGGGGTCTAT ATCCCTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46001579	mCV22871765	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss51478100	NES13969836	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	G	A	A	G	A	G	G	A
ss149073700	ENSMUSSNP1825242	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31150626					SNP	A	G	A	A	A	A	G	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478100	NES13969836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43113986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18932	CpG island 18932			269 bp proximal
Cpgi18933	CpG island 18933			1600 bp proximal
Etfbl	electron transferring flavoprotein, beta polypeptide like			975 bp downstream
Gm39000	predicted gene, 39000			within coordinates
Rr400282	regulatory region 400282			1168 bp upstream
Rr645966	regulatory region 645966			281 bp proximal
Rr645967	regulatory region 645967			946 bp proximal
Rr645968	regulatory region 645968			1008 bp proximal
Rr645969	regulatory region 645969			1016 bp proximal
Rr645970	regulatory region 645970			1708 bp proximal
Tssr66006	transcription start site region 66006			1449 bp downstream
Tssr66007	transcription start site region 66007			1377 bp downstream
Tssr66008	transcription start site region 66008			1347 bp downstream
Tssr66009	transcription start site region 66009			1336 bp downstream
Tssr66010	transcription start site region 66010			1446 bp upstream
Tssr72134	transcription start site region 72134			310 bp upstream
Tssr72135	transcription start site region 72135			1001 bp downstream
Vsig10l	V-set and immunoglobulin domain containing 10 like			Intron
				Noncoding-Transcript-Variant