rs31150988 SNP Detail

Summary

• ID
  rs31150988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:64945790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGTAAA AGTGCTTGCC
  ACTAGTGCTT GAGAATCTAA GGTCAATTCC CAGAATCAAC CGTGGATGCA AAGCTCTGAC
  TCACAAAAGT TGTCCTTTGA TGTCTACCTG ACCTTCTCCC CTCCTGATGT TCATCACATG
  GATGCACACA ATACTACTAA TAAAAAGCTG TTAAATTAAC ACGTGTATCT CTGTCTCTAC
  Y
  TTTAGCTCCA TGAAGAATGA GGCTCTACAT TCCTATTTGC TTTTGACAGC AAGAGCAAGA
  CCTGGCTCTT AGGAAGTTCC CAATAAACAT TACTTTGGCA AATAATTGGG TTTCACACAG
  TGAGATTTGC AGCTCAGCTT AGTCTCAAAT GGAAGTGATT AGATAAGATT CTGCTTATGC
  TGACACTCTT TCTCTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48021328	NES12050461	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31150988					SNP	C	C	C	T	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021328	NES12050461	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64945790 () rs orientation: forward

Symbol	Name	Function Class
D15Mit234	DNA Segment, Chr 15, Massachusetts Institute of Technology 234	1482 bp distal