rs31150990 SNP Detail

Summary

• ID
  rs31150990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:64946178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCTGG TTTCTTTTCC
  TTTTCCTAGT TAGTCTACAT TCTCATTCCT AAATTTAGTC CCACTCATTC TACTTATGAA
  GGAAAAACAG AAACCAACAC GAGGGCAAGG ATGCTTACAT TCTAGAAGTC TGTGGTCTCT
  ACCATATCAT CCATCCTCAA AAGGAAAGCA AGACAGTAAA ATGGGTTAAT CATGTTTTCT
  Y
  GGGAACTGCT CAGGGCATTT TCAACACATT TTTTTCCCTA CTAAAACCAC AGTGATTCAC
  AGTTTAGATA TTTTTATTCC TGTTTGAAAG TTGTAGAAGT CAAGGTGTAG ATAGATGCAA
  TATTTAACCC AGAGATGAAC AGCCAGCCAT AAGAAAAGTG TTGGGACAGA GCTCATCCAT
  AGAGGATTAA AGTGTTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39412295	mCV22704189	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						T
ss48021330	NES12050464	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	T	T		T	T	T	T	T
ss148026212	ENSMUSSNP2312026	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31150990					SNP	T	T	C	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48021330	NES12050464	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:64946178 () rs orientation: forward

Symbol	Name	Function Class
D15Mit234	DNA Segment, Chr 15, Massachusetts Institute of Technology 234	1870 bp distal