rs31151540 SNP Detail

Summary

• ID
  rs31151540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10160184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGCCTGG AGACCACTTT CAGGCCCCGC GAGGGGGCGC
  GTCTCTGCCG CTGGAAGTAG CCTGAGTCTC TCCGGGGAGT GGGGAGTCTG TCTTTGCTAC
  S
  CGAGAGAGGC GGAGCTCGCG CCCCACGCCA CTCGGCTCAG CCAATGGGAG CTCGCGCCGC
  GGGGCTCGGC GGTCCGCGCC AAGGGTGCTG AAAACCCTG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45002139	mCV23260295	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
ss146041201	ENSMUSSNP5345211	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31151540					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10160184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10600	CpG island 10600	within coordinates
Fads1	fatty acid desaturase 1	68 bp upstream
Gm59251	predicted gene, 59251	within coordinates
Rr362958	regulatory region 362958	within coordinates
Tssr155024	transcription start site region 155024	48 bp upstream
Tssr155025	transcription start site region 155025	65 bp upstream
Tssr155026	transcription start site region 155026	86 bp upstream
Tssr155027	transcription start site region 155027	101 bp upstream
Tssr155028	transcription start site region 155028	174 bp upstream
Tssr155029	transcription start site region 155029	187 bp upstream
Tssr155030	transcription start site region 155030	217 bp upstream
Tssr155031	transcription start site region 155031	327 bp upstream
Tssr155032	transcription start site region 155032	702 bp upstream
Tssr158164	transcription start site region 158164	636 bp downstream