rs31151699 SNP Detail

Summary

• ID
  rs31151699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9307177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCGATGGT CATAAATACA GGCAGTCATT ATTCCTCCCT
  GTCTTAGACA TAGCCTGACC TCAAGGTCAC ATAGAGCAAA TGTTAGCTGA CTACTAAGCT
  R
  AACCAAATAA TACGAAAGTT ATCTATTTCA TCCTTGGTTG ACGCAAAAGT GTGAAATTCT
  GCTTTTCCCC CAAGGGCCAT ATCACCCTTT AAGAAAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46486929	mCV22743169	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		G
ss46815022	NES10969862	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		A	G	G	A	A	A	A	G
ss134086361	ENSMUSSNP1534239	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31151699					SNP	G	G	A	A	A	G	G	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46815022	NES10969862	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9307177 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	91 bp downstream
Rr689864	regulatory region 689864	364 bp proximal
Tssr160523	transcription start site region 160523	1608 bp upstream
Tssr162909	transcription start site region 162909	992 bp upstream
Tssr162910	transcription start site region 162910	945 bp upstream
Tssr162911	transcription start site region 162911	907 bp upstream
Tssr162912	transcription start site region 162912	1669 bp downstream