rs31152749 SNP Detail

Summary

• ID
  rs31152749
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44890005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACCGTT TGGTGGCACA
  TCTGGGCCTC TCATTTGCCA GTTTTTAATT CTTATCTGCT GTCCTTAAAA TCCCTAATTG
  GCCTTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTAT
  TTTGCTCCTG AAAGGGAGGC GTTTAGTAAT TAACAGTGGT TTGAAATCAA CACGGAATAA
  W
  TGTGAAGATT AAGTCTTTGC ACCATTTCTG CCTGTGGCAT CAAGGAATCA AAGCACTGGG
  GTCACACAGG GGTGGAAGGC TGCGCCCAGA GGCAAAGGCG CTGCGGCGCA CGCGCAGTCA
  GAAGCTGCGA GCACGTGTAT GTGCACGCGC ACCGGAAGCG CCACAGCAAA CTCCTTCGCG
  TGGGTAGAGG AAGGAGGCGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46002553	mCV27566855	ABI	CRAMUS_MOUSE	f	SNP		A	T
ss51480355	NES13971396	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	T	T	T	A	A	T
ss149131912	ENSMUSSNP1600886	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31152749					SNP	T	A	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480355	NES13971396	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44890005 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	1466 bp upstream
Cpgi19038	CpG island 19038	within coordinates
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	504 bp upstream
Tssr66503	transcription start site region 66503	493 bp upstream
Tssr66504	transcription start site region 66504	528 bp upstream
Tssr72351	transcription start site region 72351	1825 bp upstream
Tssr72352	transcription start site region 72352	1717 bp upstream
Tssr72353	transcription start site region 72353	1515 bp upstream
Tssr72354	transcription start site region 72354	1478 bp upstream
Tssr72355	transcription start site region 72355	1448 bp upstream
Tssr72356	transcription start site region 72356	1294 bp upstream
Tssr72357	transcription start site region 72357	1286 bp upstream
Tssr72358	transcription start site region 72358	1261 bp upstream
Tssr72359	transcription start site region 72359	1231 bp upstream
Tssr72360	transcription start site region 72360	1194 bp upstream
Tssr72361	transcription start site region 72361	1171 bp upstream