rs31152816 SNP Detail

Summary

• ID
  rs31152816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC AGATGTTCAT TACTTGCAGA
  R
  GTTACTTTTT TCCCTTCCCT GCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45002292	mCV23752684	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		G
ss47238891	NES11096978	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		A	G	A	G	A	A	G	A	A
ss148947748	ENSMUSSNP6178807	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31152816					SNP	A	A	A	G	A	A	A	A	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47238891	NES11096978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056613 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	607 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	within coordinates
Tssr6335	transcription start site region 6335	316 bp upstream
Tssr6336	transcription start site region 6336	333 bp upstream
Tssr6337	transcription start site region 6337	514 bp upstream
Tssr6338	transcription start site region 6338	535 bp upstream
Tssr6339	transcription start site region 6339	1447 bp upstream
Tssr6340	transcription start site region 6340	1495 bp upstream
Tssr6341	transcription start site region 6341	1536 bp upstream
Tssr6342	transcription start site region 6342	1566 bp upstream
Tssr6343	transcription start site region 6343	1583 bp upstream
Tssr6344	transcription start site region 6344	1617 bp upstream
Tssr6345	transcription start site region 6345	1636 bp upstream
Tssr6346	transcription start site region 6346	1699 bp upstream
Tssr6347	transcription start site region 6347	1729 bp upstream
Tssr6348	transcription start site region 6348	1877 bp upstream
Tssr6349	transcription start site region 6349	1916 bp upstream