rs31153476 SNP Detail

Summary

• ID
  rs31153476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22037422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG GGGGGCACAG CGTGCACAAA
  R
  GGCTTGGTGC TGCCGGCCGG GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39259317	mCV22932367	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss324567168	CHEV_14_22806576	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31153476					SNP	G	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22037422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6225	CpG island 6225	668 bp distal
Cpgi6226	CpG island 6226	within coordinates
Cpgi6227	CpG island 6227	1565 bp proximal
Rr488632	regulatory region 488632	1162 bp distal
Rr488633	regulatory region 488633	1079 bp distal
Tssr127698	transcription start site region 127698	1697 bp upstream
Tssr127699	transcription start site region 127699	139 bp downstream
Tssr127700	transcription start site region 127700	202 bp downstream
Tssr127701	transcription start site region 127701	507 bp downstream
Tssr127702	transcription start site region 127702	531 bp downstream
Tssr127703	transcription start site region 127703	640 bp downstream
Tssr127704	transcription start site region 127704	1060 bp downstream
Zfp503	zinc finger protein 503	within coordinates