rs31154904 SNP Detail

Summary

• ID
  rs31154904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152103441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCACAG CCAGCACATA
  CCATTTTAAA TTTTTTATCA TTTACTTATT ATGTGCCTGT GTATCTTGGA TATTGTATGT
  GCTCAGCTCT CTGGAAGCCA GAAGAGGGTG TCTGATCCCC AGGATCAGTA TTACAGGACT
  TTCTAAACTG TTCAGAGTAA GGGGTCTGAA CTTTGGACCG CAAGACAGAG CAGCAAGCAC
  Y
  CTTAACCACT GTCTGTCTCT TTGAAACTAC AAAAGTGTAC TTACTACCTA CAGAAAGGGA
  GAGTAAAATG CTCTTTATTC TGTTTTACAA ACTTCTCAGT TTTCTACCCT GAACCTGATC
  ATTTTGTGGT CCGTGCTTTG TCCTAAGTTG TCAGGGCTAA GTTGGAGGGC TGATTTGGTA
  ATAAACTTTC ATAGCATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45504781	mCV25024536	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136102884	ENSMUSSNP3197511	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028817	CHEV_3_152060768	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31154904					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152103441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13950	CpG island 13950	531 bp distal
Rr77388	regulatory region 77388	within coordinates
Tssr32411	transcription start site region 32411	1745 bp downstream
Tssr32412	transcription start site region 32412	1722 bp downstream
Tssr32413	transcription start site region 32413	1410 bp downstream
Tssr32414	transcription start site region 32414	1102 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	within coordinates