rs31154904 SNP Detail

Summary

• ID
  rs31154904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152103441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATCACAG CCAGCACATA
  CCATTTTAAA TTTTTTATCA TTTACTTATT ATGTGCCTGT GTATCTTGGA TATTGTATGT
  GCTCAGCTCT CTGGAAGCCA GAAGAGGGTG TCTGATCCCC AGGATCAGTA TTACAGGACT
  TTCTAAACTG TTCAGAGTAA GGGGTCTGAA CTTTGGACCG CAAGACAGAG CAGCAAGCAC
  Y
  CTTAACCACT GTCTGTCTCT TTGAAACTAC AAAAGTGTAC TTACTACCTA CAGAAAGGGA
  GAGTAAAATG CTCTTTATTC TGTTTTACAA ACTTCTCAGT TTTCTACCCT GAACCTGATC
  ATTTTGTGGT CCGTGCTTTG TCCTAAGTTG TCAGGGCTAA GTTGGAGGGC TGATTTGGTA
  ATAAACTTTC ATAGCATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45504781	mCV25024536	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136102884	ENSMUSSNP3197511	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028817	CHEV_3_152060768	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31154904					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152103441 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			531 bp distal
Rr587543	regulatory region 587543			1662 bp distal
Rr587544	regulatory region 587544			1882 bp distal
Rr587545	regulatory region 587545			1822 bp distal
Rr587546	regulatory region 587546			1733 bp distal
Rr587547	regulatory region 587547			1100 bp distal
Rr587548	regulatory region 587548			1543 bp distal
Rr587549	regulatory region 587549			1508 bp distal
Rr587550	regulatory region 587550			1086 bp distal
Rr587551	regulatory region 587551			within coordinates
Rr587552	regulatory region 587552			86 bp distal
Tssr32411	transcription start site region 32411			1745 bp downstream
Tssr32412	transcription start site region 32412			1722 bp downstream
Tssr32413	transcription start site region 32413			1410 bp downstream
Tssr32414	transcription start site region 32414			1102 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				Noncoding-Transcript-Variant