rs31158016 SNP Detail

Summary

• ID
  rs31158016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55292200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT GGAGCCTGGC ATGGCTGTGG
  Y
  GTTGTGTGGA TTGGGAAGGG TGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39260275	mCV25266533	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss139576697	ENSMUSSNP3083398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31158016					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55292200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6483	CpG island 6483	475 bp distal
Rr492408	regulatory region 492408	1843 bp distal
Rr492409	regulatory region 492409	1735 bp distal
Rr492410	regulatory region 492410	108 bp distal
Rr492411	regulatory region 492411	260 bp proximal
Rr492412	regulatory region 492412	643 bp proximal
Rr492413	regulatory region 492413	761 bp proximal
Tssr125745	transcription start site region 125745	818 bp downstream
Tssr125746	transcription start site region 125746	127 bp upstream
Tssr125747	transcription start site region 125747	917 bp upstream
Tssr125748	transcription start site region 125748	1106 bp upstream