rs31158085 SNP Detail

Summary

• ID
  rs31158085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87754413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGG AAGGCCCTTA TCAGAGGCCA
  R
  CACCACTTGG GAGTTCCAGC TTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss45003002	mCV25133121	ABI	CRAMUS_MOUSE	f	SNP	G	G	G				A		G
ss60762268	NES16403458	PERLEGEN	MM_PANEL2	f	SNP				A	A	A		G			G	G		G
ss319829840	CHEV_1_89723266	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31158085					SNP	G	G	G	A	A	A	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762268	NES16403458	PERLEGEN	MM_PANEL	f	SNP	A/G
ss144885077	ENSMUSSNP2997102	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87754413 () rs orientation: forward

Symbol	Name	Function Class
Rr366949	regulatory region 366949	1626 bp upstream
Rr371669	regulatory region 371669	within coordinates
Rr414853	regulatory region 414853	1713 bp distal
Rr414854	regulatory region 414854	1618 bp distal
Rr414855	regulatory region 414855	367 bp proximal
Rr414856	regulatory region 414856	1001 bp proximal
Rr414857	regulatory region 414857	1247 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron
Tssr7901	transcription start site region 7901	1598 bp upstream
Tssr7902	transcription start site region 7902	1876 bp upstream