rs31159998 SNP Detail

Summary

• ID
  rs31159998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143906460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAACA CACCCATACT
  CCCGCACCAA ACTGCACCGG GATCTTGGGC AGCATTCACC AGCCACAGAT AAGGCCAACC
  ACAACAGCAG GGTTAAACTT TGAATAAAAT ATCCCACCCA CTGATTTAAC AGCTTCAGGA
  AGATCACTAT ACAGACAAAG GTTCAGAACA GACACTTAAA TAGAAGGAAA GTCTTCTTTT
  Y
  TCTCTCTCTC TAGTGGTATT GGTGTGGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGGTTTTTT TTTTTTTTTA ATTACTGGAT GTTGAAACAG AACACCTCCT AGAAGCATTC
  AAGTGCGACA GTCTATCAAA CCATTTACTC AAATTAAATG TGTAATCCTT CAAATGCCTC
  CTTTCAAATT AATGAGTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45505352	mCV23166429	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136029262	ENSMUSSNP128348	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31159998					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143906460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13893	CpG island 13893	1686 bp distal
Cpgi13894	CpG island 13894	1112 bp proximal
Gm43445	predicted gene 43445	1437 bp upstream
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	26 bp downstream
Rr586595	regulatory region 586595	1448 bp distal
Rr586597	regulatory region 586597	947 bp distal
Rr586598	regulatory region 586598	86 bp distal
Rr586599	regulatory region 586599	1286 bp proximal
Rr586600	regulatory region 586600	1623 bp proximal
Tssr35961	transcription start site region 35961	1309 bp upstream
Tssr35962	transcription start site region 35962	228 bp downstream
Tssr35963	transcription start site region 35963	1216 bp downstream
Tssr35964	transcription start site region 35964	1263 bp downstream
Tssr35965	transcription start site region 35965	1601 bp downstream
Tssr35966	transcription start site region 35966	1651 bp downstream
Tssr35967	transcription start site region 35967	1880 bp downstream