rs31160815 SNP Detail

Summary

• ID
  rs31160815
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150319593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTGCTC TCCCTTCTGA GTAACCTCAT
  TTTACTGATA ATACAGTTTG TGCTTACATG TTTAGATACG ACCTGACATA TATAAGTAAA
  TGCTGTATTG GTACTAGGGG TGATGTTGGT TATTAAAGTG ATCATGATAG GTGGTTTATT
  K
  TAGGAGCTCA GGTCTCAGTA GCCAGGTGTA ATGCAACAGG CTAGAAGCAC GACAGTGTGC
  CTGATGATCT TCATTGAGCC AAGTGAAGTA ATTGTTCTAA CAACTAATAA GTGAGCACAC
  CTGTCTTACA CTTCCTAGTG ATTACTTAGA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49709262	NES13065477	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G		T	G	G	G		G
ss320048307	CHEV_1_152290972	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31160815					SNP	G	G	T	G	T	G	G	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709262	NES13065477	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150319593 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	within coordinates
Rr420145	regulatory region 420145	1910 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron