rs31160818 SNP Detail

Summary

• ID
  rs31160818
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150319326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAGTAAG TTGATGTAAT GAGAATGAAT
  GTTTGGTGAT CCCTAGCTGC TTTCTCTTTA CCTTCTAAAT TGTTTTTTTG GATGTGTTAT
  TTGTAGAGTC CTACCCTACT TGTCCATGAA TCTATATATG TAATAGGATC GTGAAAAAGT
  M
  GTGTTGAGGA AGACTATCTA GGGTGAATAA AGTATACCTT CTTCTAACTG AAGCACAGTG
  TTACAGTGCT TATGAAGGTG GTTTCTACGG TTCGAGTGCT TCCTCACAAG AGCAGGCTCC
  TTGCTCTCCC TTCTGAGTAA CCTCATTTTA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49709265	NES13065469	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	A	C	C	C	C		A	C	C	A		C
ss320048306	CHEV_1_152290705	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31160818					SNP	C	C	A	C	A	C	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709265	NES13065469	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150319326 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	218 bp upstream
Rr420145	regulatory region 420145	1643 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron