rs31160820 SNP Detail

Summary

• ID
  rs31160820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150319278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGA TGTGTTATTT GTAGAGTCCT
  R
  CCCTACTTGT CCATGAATCT ATATA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45029422	mCV23537800	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A	G
ss49709267	NES13065464	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	G	A		A	A	A	A		A
ss145707681	ENSMUSSNP4712090	ENSEMBL	ENSEMBL_Sanger	f	SNP			G						G
ss320048305	CHEV_1_152290657	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31160820					SNP	A	A	G	A	A	A	G	A	G	G	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709267	NES13065464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150319278 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	266 bp upstream
Rr420145	regulatory region 420145	1595 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron