rs31160823 SNP Detail

Summary

• ID
  rs31160823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150319037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGTTGA TATTTCATTA
  CAAAAGTAAT AAACTGTATC TTTGGTGTTT GTTTTAATTG CCTAATTCTT AAAGCAAATA
  TAATTCTTTT TCAAACAGAG AATTCAGATG ACCCGGAGGC AGTCTGTAGG GCGTGGTCTT
  CAGTTGACTC CAGGAATAGG TGGCATGGTT AGTATCCACC CATCCTGTGC ATGTAATTCA
  M
  ATGTATGTGG TTAGGCCTAT TAAATACTGT GCTCTGTCTG TGTTTCAGCA ACAACACTTT
  TTTGATGATG AAGACAGAAC AGTCCCGAGT ACCCCAACTC TTGTGGTGCC ACATCGCACT
  GATGGGTTTG CTGAAGCTAT TCAGTAAGTT GATGTAATGA GAATGAATGT TTGGTGATCC
  CTAGCTGCTT TCTCTTTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49709270	NES13065457	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31160823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709270	NES13065457	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150319037 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	507 bp upstream
Rr420145	regulatory region 420145	1354 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron