rs31161645 SNP Detail

Summary

• ID
  rs31161645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150318458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTTAA ATTTTATTTA
  ATGTAAAATG CATTTAGCTG GCTTAGTAAC AGTTTTGAAC ATTTCTTACT TAAGGTTCAT
  AGATTTTTTT TTATTGTTAT TCTACCTAAC CATTTTTTCA CATCAAATAT TTCTACTTAG
  TTCATTAGTG ACCCTATGTA TTCAGCATGG AGTAAGTTAA TTCATCTAGC TTGGTTCTTA
  Y
  TCTGGACATG GTGAGTGTAT TGAGAACCAA CCATTATGTA TAAATCAAAT TAAAATAAAA
  GTAGTGGAAA TTACTTGATA TTTGAAAATA CAGAGTCTAA AGGAACTATA TGACTAGGCA
  TCACAAAGCA TTCAGTCTGC CAATTCAAGA TTGTTTTAGC TGTGAAGTAA GAAGTCAGTT
  GGTATATAAA CTACAACGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49709272	NES13065455	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31161645					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709272	NES13065455	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150318458 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	1086 bp upstream
Rr420145	regulatory region 420145	775 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron