rs31161648 SNP Detail

Summary

• ID
  rs31161648
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150318165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCAGG AGCTGGGACC
  ACCAGTTCAG GTATTAAAAG AACCCAGCTT CTGAAAAAGC CACCTTGTAA ATTCTCTTTT
  CCATCACATG GTCCTTCCTT TATTCCTTCC AAATAGTAGA ATTTTTAATG TTTTGGCATG
  TTGTAAGATA CTACTTTTAA TTGAAACTAA TCTCCAGTTT CTGAGTGTGA ATGAGTTGGC
  W
  TTTGAAAACA CAACTTGCTA AAAATTGTAT AGTTATTAAA GTGATTATAG TCATAGCAAA
  TACAATTCTG CTTGCTGTTA TTATAGGCTT AAAATTTCTT AAATTTTATT TAATGTAAAA
  TGCATTTAGC TGGCTTAGTA ACAGTTTTGA ACATTTCTTA CTTAAGGTTC ATAGATTTTT
  TTTTATTGTT ATTCTACCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49709275	NES13065452	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31161648					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709275	NES13065452	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150318165 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	1379 bp upstream
Rr420145	regulatory region 420145	482 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron