rs31161649 SNP Detail

Summary

• ID
  rs31161649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150318066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAAGGCGC CCTCCACATC CTCTCCCCCC
  ACGCCTGACC ATTCACGCCC CACCTCAGGA GCTGGGACCA CCAGTTCAGG TATTAAAAGA
  ACCCAGCTTC TGAAAAAGCC ACCTTGTAAA TTCTCTTTTC CATCACATGG TCCTTCCTTT
  M
  TTCCTTCCAA ATAGTAGAAT TTTTAATGTT TTGGCATGTT GTAAGATACT ACTTTTAATT
  GAAACTAATC TCCAGTTTCT GAGTGTGAAT GAGTTGGCTT TTGAAAACAC AACTTGCTAA
  AAATTGTATA GTTATTAAAG TGATTATAGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss49709276	NES13065451	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A		C		A
ss320048302	CHEV_1_152289445	CHEVERUD	SCREENING_POP	f	SNP						A		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31161649					SNP	A	C	C	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709276	NES13065451	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150318066 () rs orientation: forward

Symbol	Name	Function Class
Rr372230	regulatory region 372230	1478 bp upstream
Rr420145	regulatory region 420145	383 bp distal
Tpr	translocated promoter region, nuclear basket protein	Intron