rs31162083 SNP Detail

Summary

• ID
  rs31162083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:65070353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAAGAC TCCATGGGAA
  GACCAGCAGG CTCAACTAAC TGGAACCTTG AGATCTTTCA GATACTGATC CACCAACCAG
  ACAGCATACA CTAGCTTGTC CGAGGCCCCA ACACACATAT AGCAGAGGAC TGCCTGGTCT
  GGACTCAGTG AGAGAAGATG CACCCTAACC CTTGAGAGAC TTGGAGCCCC AGGGAGTAGG
  R
  AAATCTAGTA GAGTAGGGTC ATTTACTTGG AGACAGGAGA GGAGGTATAG GATAAGGAAC
  AGTCAGAAGG CTGTCCGAGA GGGGGATAAC GACTGGACTG TAAAATAAAT AAATAAATAA
  ATAAATAAAT AAATAAATAA ATAAAATATA ATAAAAATAT GCAAAATAGA AAAGATAGGT
  GGTTTTCCTT TTTAATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46489770	mCV24780931	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss134190946	ENSMUSSNP1251124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss325892276	CHEV_X_63279922	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31162083					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65070353 () rs orientation: forward

Symbol	Name	Function Class
H2al1r-ps	H2A histone family member L1R, pseudogene	857 bp downstream
Tssr161126	transcription start site region 161126	1251 bp downstream