rs31162333 SNP Detail

Summary

• ID
  rs31162333
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGATTCAGCA AACGCAGGGC CTGGACGTTT TAAGGGACGT TGTCGAAGGG TGCAGAAGCA
  GGCTCCCCTA ATCCCACCGC AATCCCAGAT TCGGATTGAT GTAAACTAGT TTAAATTTCG
  AATTGCTCTG GAGGCTTGAG GCATCAAGTT GGCTTGAGCC CAGGCGCTCA GGGATACCCT
  AGGCAACACA TCGAGACTCT TGTTCCTTAA AATAGATTTC TATTGTGCAA CAGGCTGTGA
  GCAACTGTGT AGTTCTAGGG TCCAAGGTGG ACGTGGGTAT AGGACTCATA ACTGCGGCTT
  M
  GAGAACAGCA GAAGTGGCAT TGGCTCTCTC GAGTGGCATT GTGCCTCTCG ATTGGCTTAT
  GTTGAGTGAG CTTAGGGTGC TTGGGAGGCA GAAGGAAATA GCTCAGGATG GGTCAGTGAC
  TTCAGGCTGT CATCTAGGAA TCCAGCCGAA GCCAGAGTCT AAATGCTTCT TGTTGCTTGT
  CTGGTCACAG CTTGAAAAAC ATGGCCAGAA CAGGTTCGGA CTCTGTTCTG CTCTTTGCCA
  TCTGACAGCA TTTGTGCCAC CCAGCATGAC CCGCGGTTCT ACATTCCAGA CTTAGCCAGC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46003970	mCV23260224	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31162333					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772813 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	83 bp distal
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	372 bp downstream
Rr642445	regulatory region 642445	898 bp distal
Rr642446	regulatory region 642446	1220 bp distal
Rr642447	regulatory region 642447	624 bp distal
Rr642448	regulatory region 642448	121 bp distal
Rr642449	regulatory region 642449	880 bp proximal
Tssr64535	transcription start site region 64535	1186 bp downstream
Tssr64536	transcription start site region 64536	839 bp downstream
Tssr70652	transcription start site region 70652	1219 bp upstream
Tssr70653	transcription start site region 70653	1194 bp upstream
Tssr70654	transcription start site region 70654	1054 bp upstream
Tssr70655	transcription start site region 70655	935 bp upstream
Tssr70656	transcription start site region 70656	917 bp upstream
Tssr70657	transcription start site region 70657	579 bp upstream
Tssr70658	transcription start site region 70658	564 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	611 bp upstream