rs31162380 SNP Detail

Summary

• ID
  rs31162380
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150316320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATTTGG TGTGGCTTTT
  TTTGTAACCT AGTCATTTGA TCTGCTTCAG TCATTACATT TTGTTCTTAG GGTGGTGATG
  GGACTGATCC AGGTACAGAA ACAGAAGAAA GTATGGGTGG AGCTGAAAGT CATCAGAGAG
  CTGCTGATTC TCAAAACAGT GGTAAGAGCA TTAGTCTTTC AGTAGAGTAG TCTGGTAATA
  K
  TTTTTAATAT TTTACTAGAG TTGTACTTCT GATGTAGTAT AACTCTAGTA AATTGGTAAC
  TAAGTGCTCT GCCCTCCTGA TGTGGCCATT AGATGCCATT ATACTATCTG TCCACCTCAT
  TGAACTATTG TGAAGGTCAA ATGTCCTAGA CTCTCTAATG TAGCATAAAG CCATTTGGAA
  TAATTAAAGC AGGGATGGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49709287	NES13065566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31162380					SNP	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709287	NES13065566	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150316320 () rs orientation: forward

Symbol	Name	Function Class
Rr420145	regulatory region 420145	1342 bp proximal
Tpr	translocated promoter region, nuclear basket protein	Intron
Tssr9361	transcription start site region 9361	1465 bp downstream