rs31162382 SNP Detail

Summary

• ID
  rs31162382
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:150315726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATCAAAGA AGAAACAGGA GTTCATAGTT
  GTTTTATTTG TTTGTTTCTA CTTTACCACC CTGTACCATT TCCAAATCAA TCACTTTCAT
  TCTTTGAAAT GTTACAGTTT tttgtttgtt tgtttgtttg tttTTTCCCT TACTGTGGAA
  M
  CGTCAAAACT CTTGAAACAC TCCTGTATGC TATTCTAAGT GTGCAAAAGG AGTGGCGTGC
  ACTTTATTCA CACTTGGACA TCTTCTTCTA Ggattatgaa gaagacgaag atgatgatga
  tgatgaagaa gatgacacgg ggatgggaga                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49709289	NES13065596	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	C	A	A	A	A	A		C	A	A	C		A
ss320048293	CHEV_1_152287105	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31162382					SNP	A	A	C	A	C	A	A	A	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49709289	NES13065596	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150315726 () rs orientation: forward

Symbol	Name	Function Class
Rr420145	regulatory region 420145	1936 bp proximal
Tpr	translocated promoter region, nuclear basket protein	Intron
Tssr9361	transcription start site region 9361	871 bp downstream