rs31162525 SNP Detail

Summary

• ID
  rs31162525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43086120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATGAGGAT GTGGGAAGGT CGTCTCCTCT TCAAGCTTTT
  TGGAATCCTG TCTGTCCTGG ACAGAAGCTT TGACTAGGAA TGTGGAATCT CTGCTCCCAC
  Y
  GACTCAAGTC CTTCTTCCTA TGGGACTGGT GTTTTGACCC CACTGCCCCT TTACTGTTGG
  AAACTCTAAT GCTAGAGTCT CAGAGTGTAA AAACCACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46003560	mCV22666152	ABI	CRAMUS_MOUSE	f	SNP		T	C					C	T
ss51478227	NES13970383	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	T	C	T	C
ss149072657	ENSMUSSNP1360500	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31162525					SNP	C	T	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51478227	NES13970383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43086120 () rs orientation: forward

Symbol	Name	Function Class
Gm52993	predicted gene, 52993	705 bp downstream
Lim2	lens intrinsic membrane protein 2	700 bp downstream
Nkg7	natural killer cell group 7 sequence	442 bp upstream
Tssr2210	transcription start site region 2210	312 bp upstream
Tssr65999	transcription start site region 65999	270 bp upstream
Tssr66000	transcription start site region 66000	436 bp upstream
Tssr66001	transcription start site region 66001	890 bp upstream
Tssr66002	transcription start site region 66002	904 bp upstream