rs31162791 SNP Detail

Summary

• ID
  rs31162791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:77898979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACAGATA GTTATTATGC
  ATAAAATTGC CTGCTGTCCC TCAGGACTAG AAAATGAGAC ATTGCATCGC TTAAGGGCAT
  CCTAAAAGGA ATATTGATAA GCAAATAGAA TAACTGAACA TTTGGTAAAT TGCTATTTCA
  ATGAATTATA TCCTTCTTCA ATTCAGAAGG TATTGCCCTT TAGGAAAGTA TAGAAACTGG
  R
  AAAGGAAAAT CAATGTATTC TCCACATAAA CTTCAAAAGC ATTGAGCTTT GACGCTGAGA
  GTTCACGTGT AGAGATGAGA GAATACTATT TTTTTTTTTT TTTTTGTATA GAAGAAATTA
  TAGTTACCAA GTGAGCATGG GCATTGGCAA ACGCAGCCCT TCCTCTGTAT TCTTTGTGAT
  TAAATATAAG TCTGCAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47023773	NES10771654	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31162791					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47023773	NES10771654	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:77898979 () rs orientation: forward

Symbol	Name	Function Class
Gm64396	predicted gene, 64396	within coordinates
Rr578410	regulatory region 578410	1922 bp proximal