rs31163258 SNP Detail

Summary

• ID
  rs31163258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17813594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA TCGAACGAAA ACCCACCAAA
  R
  GCACCTCAGC AAAGCATTCC TGCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
ss45003185	mCV23246720	ABI	CRAMUS_MOUSE	f	SNP		G	G		G		A
ss50679595	NES13609745	PERLEGEN	MM_PANEL2	f	SNP	G			G		A		A
ss146130626	ENSMUSSNP6092965	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
rs31163258					SNP	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50679595	NES13609745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17813594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	within coordinates
Cpgi10666	CpG island 10666	263 bp proximal
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	1346 bp proximal
Rr544887	regulatory region 544887	1392 bp proximal
Tssr158513	transcription start site region 158513	1390 bp downstream