rs31163729 SNP Detail

Summary

• ID
  rs31163729
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:77899219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGAGCTT TGACGCTGAG
  AGTTCACGTG TAGAGATGAG AGAATACTAT TTTTTTTTTT TTTTTTGTAT AGAAGAAATT
  ATAGTTACCA AGTGAGCATG GGCATTGGCA AACGCAGCCC TTCCTCTGTA TTCTTTGTGA
  TTAAATATAA GTCTGCAAAC AATAAATGTC TCCTCAAAGC AATTTCTGGG ACCTAGAAAC
  K
  TGCAGAAGCT TCGTGTAAAG TTTCAAAAGT GAATGGACAT ACTGCAGCAC AGAAGACAAG
  CACCCTTGTT TGGGGAAGAG AAAAAAATGT ATTGAAAGCA TCTCATTACT TGTTTAAGTG
  GAACATGATG GTACACTCCT ACAATTTCAG CAAAGAGGAA GCTGAGGCAG GCAAATCTCA
  AATGCTAACA CTGGATTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47023781	NES10771669	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31163729					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47023781	NES10771669	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:77899219 () rs orientation: forward

Symbol	Name	Function Class
Gm64396	predicted gene, 64396	within coordinates
Rr578410	regulatory region 578410	1682 bp proximal