rs31167314 SNP Detail

Summary

• ID
  rs31167314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:50743471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGTTCT CTGCTCCATG
  CTGGCAGAAG CTTCACTACA TATGTTCTCA GTTTCAATGA GTCACTCTAA GTCAGTAAGT
  CCTATCAATG TAATGTGCCT CTAAAATCCT TCATCACGTT TCTATCCCAT GTCACCTAAC
  TATTCATCTA CAAAGCAACT TAATACGTCA CGATAAAGAA AGCCTGTCCT GTTTTTGTAG
  Y
  ATTAACCATT TAACACATCA TACTAAAAGA ATAAAGAATG GCCAGCTCTT GATAAGCTAA
  ACTTCTTGGA GCTGAACTTT TATATCTAGA GACAGAAATT TATCTAGCAT TTGACAGTAA
  ATGTTATGCT AAGTTAAAAG TCAGCAGAAT GCTCACACGA TTTTATATTT TAAGTGTCTG
  GCTGCTGTGT TTTTGATAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47524346	NES11455954	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31167314					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47524346	NES11455954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:50743471 () rs orientation: forward

Symbol	Name	Function Class
Gm45341	predicted gene 45341	within coordinates
Rr176972	regulatory region 176972	1530 bp proximal
Rr189942	regulatory region 189942	1585 bp proximal