rs31167531 SNP Detail

Summary

• ID
  rs31167531
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAAGTGA CCTGGTGTGT GGGTGTGCAG
  AGAACTCCAT GCGGTCGGAC AAACATTTCC CACTCTCCTC AGCCTCCCCA TCCTGTTACT
  TGGTCCGTGG CAAATGAATG ATCTGAAAAC TACTGGTCCC AGCAAGGTCC AAAGTTATTT
  S
  AAGTTTCAAA GCATCATTGG ACCAAAAACA GCACAAAGTG CTGCAGTAAG GAAGCTGTTG
  CTGGGAGAAG AAGGGATGCA TGCCAACATG GCCCATGGGC TTGTTGGCTC AGTAGTGCTA
  AGTCAACACA TTCCATAATG TGTCATGTTA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49710617	NES13072536	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G		G	C
ss320070049	CHEV_1_154888234	CHEVERUD	SCREENING_POP	f	SNP							G			C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31167531					SNP	G	G	C	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710617	NES13072536	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916855 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1680 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			294 bp distal
Rr420582	regulatory region 420582			731 bp distal
Rr420583	regulatory region 420583			552 bp distal