rs31167533 SNP Detail

Summary

• ID
  rs31167533
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAGTAAG GGTTTTTGCA
  GGAAAGCTGC TTGCAGAGTT ACAGAGGATG TCAGGGAGAA TGTGTGGCAT TGACAGCCAG
  CACCTCTAAA ATGGGGGAGC CAGGAAGAGG AGGGACAGGA CAAGCGAGGA GCTGCCTGGG
  ACACACAGAA AAGACCAGCA TCCAAAGACT CTAAATCTCC AGGCACTGCT CCCGAGAGAG
  M
  TGCCTGAGCC ACTAAGAAAT GTCTTTATGA CAATGAAAAG TGACCTGGTG TGTGGGTGTG
  CAGAGAACTC CATGCGGTCG GACAAACATT TCCCACTCTC CTCAGCCTCC CCATCCTGTT
  ACTTGGTCCG TGGCAAATGA ATGATCTGAA AACTACTGGT CCCAGCAAGG TCCAAAGTTA
  TTTGAAGTTT CAAAGCATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49710619	NES13072534	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31167533					SNP	C	A	C	A	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710619	NES13072534	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1496 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			110 bp distal
Rr420582	regulatory region 420582			547 bp distal
Rr420583	regulatory region 420583			368 bp distal