rs31168417 SNP Detail

Summary

• ID
  rs31168417
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCATTCAG GGTTAGCTGA TCTCAGCTTC
  AGAGTAGAAC ATTGGGACCT CTGAAGTGAG AAAGAGTAGA GCAGGGTGAC AGGGAGTGAG
  GTCATGACCT GTGACCTCTA GATGACCTAT CTACATTGTG CTCTCAGGGC TCTGTGTGGT
  S
  TGAAATACCA GGTGATGCTC TTCTCCAAGA ACACCCTCCT CTTTCCTGCT CTCTTCATTC
  TGGCTGGAGT GTTGGCTGTA GCCACTCCAT GACTGCCAGG GAGCTTCAGG GACAGCTGAT
  ATGATGAGCT CCAACATTTA GTAAGGGTTT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45164977	mCV24633896	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		G
ss49710623	NES13072530	PERLEGEN	MM_PANEL2	f	SNP		G	C	G	C	G		C	G	G	C		C	G	C	C
ss145736595	ENSMUSSNP3521083	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G							G
ss320070041	CHEV_1_154887714	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31168417					SNP	C	G	C	G	C	G	G	C	G	G	C	G	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710623	NES13072530	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			1160 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			within coordinates
Rr420582	regulatory region 420582			211 bp distal
Rr420583	regulatory region 420583			32 bp distal