rs31168420 SNP Detail

Summary

• ID
  rs31168420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152916119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGGTCAAC AATACTGGTG CTGACTCAGC
  CTGAGGCTCT GCAGGGATTC GCTCTGCTTT CCACTCCCCT TCAAAGGATC TAGAGAACAA
  AGGCCTATTG TCCAAGGGCA TTGCCCAAGG GGGCAGAGAT GGTGAATTCC ACCAGAGGGC
  W
  CTCCTCAGAA AGACTTGGTT CACCTTTCTG GGAGCGCCCA GGATTCTCTC TTGAGAATGC
  TCTTTGAGCA TTCAGGGTTA GCTGATCTCA GCTTCAGAGT AGAACATTGG GACCTCTGAA
  GTGAGAAAGA GTAGAGCAGG GTGACAGGGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49710626	NES13072527	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	T	A	A	T		A	A	T	T		T
ss320070035	CHEV_1_154887498	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31168420					SNP	A	A	T	A	T	A	T	A	A	T	A	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49710626	NES13072527	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152916119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D1Ertd182e	DNA segment, Chr 1, ERATO Doi 182, expressed			944 bp distal
Nmnat2	nicotinamide nucleotide adenylyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420581	regulatory region 420581			within coordinates
Rr420582	regulatory region 420582			within coordinates
Rr420583	regulatory region 420583			163 bp proximal